Scaffold Ga0209084_1000331

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1000331
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44397
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (36.49%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F016922	Metagenome	243	Y
F025916	Metagenome	199	Y
F026794	Metagenome	196	Y
F037053	Metagenome	168	Y
F051685	Metagenome	143	N
F051687	Metagenome	143	N
F057879	Metagenome	135	Y
F067392	Metagenome	125	N
F093228	Metagenome	106	Y
F094889	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100033126	F051687	N/A	MRNSGFKMDMSGIRRKQRELAAIPARIFKPEISNYLLRPSLNKAKAATPVRDLATIRENQVGKPNSQYAKWKARGGGQGVTKAQFLADRAPARFLFQLQWVQVGYSLGVNVTASAAVLSATTRNHNEPDIPQGRGQWHGGETKLTASISVPFLDAPERKYKPFTGQGILTPIMAAQFPVFNRACERKMKRVVAAIARS
Ga0209084_100033129	F094889	AGG	VSDSTLDEHADALDSERKDRAVAMLGLPELIAGVQVEPLTPRRLEWLRAMGNPFVCGGECPIAAIPDFLWYVTKDFAFGDDERRRAFLAAILDLDVDDAREGIDEYLDRAFLDAGPGREGVSFYGSTAGLYCSLNTAYPGAGWHLERVMDTPLRVLYQLIKAADDARGCTMQNRRSSPLISKFLCEIEHFELSIVADFDAEMDAFVDAKCAEGYKLCSEPIQKINLAIPAACQPDAPWIIPMRKVN
Ga0209084_100033131	F067392	N/A	MSTPNRVMVGTLSSVTFDGPGRYVRPFQDKGDTWSFEWHIDCYQLAANFTPFQNNRFYSPGFVSPVEQMQAVTTPLGTAYLVHEEQPEYTACRGWLKFKRVYASLPITRQEGTSVTHSFQYYSTSASYDWTNPPPAPEVAEWPLVCAGYYLYEYFLSYWPDVIRAPKITSIFGILLKTNWPPPTSGPFVSKDSEISIYKGSIIERKTLYVNPPTLAQLV
Ga0209084_100033132	F093228	N/A	MEPVKLANAENAFDGGVLDKKWMFNVVGHLNLWHAGEVKLPSTEWGSGRILVSNTGWVVDLTRLKVPASSQVQSQREFQIVADGANTVKIYNGTLFGQLPTGFSVGNSPIFTLTVANGDKIYAKVTWNRTLNITGNIVSTITTRTIEAAATVPANDPQAGTRHYLLASVTLGTGNIPVIAQSRWGPIDDLPGTARYNYVMNSASTSAQTDYWDLLATGKGKQAGGVTDLAPDYDSVQVSGYGGWLRFIQDGTNLKIFARGTTMNSVGQITYIAPEYVVFDKPVVCETTVDVLVGLRLNGGYLEGQYRTIKVNAVATPSPEWVSTGIPVTAGTTIKCV
Ga0209084_100033139	F051685	N/A	MNTPNWLRFRAGERTHVVTGMSGPMHLVPCGYAAHGATGVPDKRAKKCRACSRAVRPVSPQDRRIAGHAPE
Ga0209084_100033151	F011473	N/A	MNWKKYITDPLTKRPRRGAISRIAALLGTHYGCARRMFDGVWNPTAAEALRLKNMALVRAALMPKKRSDAGKKRGEYRKRAVVKSCAVPPQLKALRSAKKTARK
Ga0209084_100033153	F016922	N/A	MSNPNPIKISSRAIQCRADATGATEYAIRCGGRDFLVTAHSKAEAEHAAEYYRPEPDSAETLLPGIPPSE
Ga0209084_100033156	F057879	AGG	MEILNMSAEKSSEETNPRDTVRPEPVPAGGEQEPSSPFSDASQVPPWEL
Ga0209084_100033158	F026794	GAGG	MMHSGDWPNSISERDLRVTASQLRADENDAREATRGEVTFDEIDRRYADPISREEMIPLLNFITAFCYGRTVWAYELKERYGRPLPTWTPITEWDAHFQPQCLSLTYRTDNPFVTEQP
Ga0209084_100033161	F009945	GAG	MSTALAIFKRDNGIATHRLAGAGHRYPWMAFFTTITMNDGTHRGFTDVAAEYSMAALIGRNKVVEREDELSACKILAERNGIPWPANEPKTRKSRP
Ga0209084_100033162	F037053	N/A	MTTPTVDDIIADLESRGLGWSLDHTGRLIEARVWDWPTVIGRYRPHTTEPLAKMLATAAFEVDWTKYPVKP
Ga0209084_100033172	F025916	N/A	MPTHLTRPHRGCRLRDCGAPDCPTCAGAEAARIYREQQECDHEEHDHGHCLACGADITDTLAGQAEDAADAREDR