Scaffold Ga0209084_1000276

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1000276
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49324
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (10.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006142	Metagenome / Metatranscriptome	380	Y
F017303	Metagenome / Metatranscriptome	241	Y
F047682	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_10002762	F047682	GGA	MRSSTIICIRWKLTGRLEHFVNLGKVFTYYDSDELGVSRSILNRRNLFDGYQNDMIEVIKTYVK
Ga0209084_100027628	F017303	N/A	MSMIIKNQQLTNDTIGALNTLIELDINATIAFRLTRIIKELSSIVEDKLKMEKKILDKWVEKDEQGNPVVPTGKDGNPIEGTVNITNVDEFTKEMTQLMEIETEIPFEKIDFEDLGLTTAKVKDLIKLEFLFN
Ga0209084_100027632	F006142	N/A	MKRQNKLILEFTEFERLFETSEFNLQRMNSDSVQASAHVDDPSLSINAFDKNQDMIRQAMSRINDIMYNLKGTNAYKALRSKLALEEQDIKRLKVLRIVKSTSLKYDIYIAFTIGEEEYWGVLEDMMSGSPDFTSEVFKDADLYQPKEWIIKIKGLIVKTLKTWLKPEPGMYRLLNDEVLCYSVETGKQLRMEKGIEIELIRSHNDKIVIKHNSDIYNLVGDNYVYFNWWFEKIEE