Scaffold Ga0209084

Basic Information
Taxon OID	3300027749 Open in IMG/M
Scaffold ID	Ga0209084_1000172 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027749 Open in IMG/M

Scaffold ID

Ga0209084_1000172 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63011
Total Scaffold Genes	94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	76 (80.85%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

63011

Total Scaffold Genes

94 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

76 (80.85%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F006894	Metagenome / Metatranscriptome	362	Y
F008879	Metagenome / Metatranscriptome	326	Y
F014358	Metagenome	263	Y
F028085	Metagenome	192	Y
F031360	Metagenome	182	Y
F042869	Metagenome	157	Y
F059768	Metagenome / Metatranscriptome	133	Y
F069826	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100017224	F069826	AGGA	MTEEIKKRKGRGAGKKPTLFNTSLRIPMEVMDYFNTHHPYTKQAKIREILTEYVNSQQQGANNGN
Ga0209084_100017230	F042869	GGTGG	LIRKDDTIKNRVPIGSLELKLAVARAEGYAIRVDETRYHHIVDGTTVTSVDESKPKYYYYGPQELLLPMLDPYRIAMEFYLKEKNT
Ga0209084_100017232	F028085	GGAGG	MLEALVSIFLMTALMAVGAIMFVIVCAMIGWAVFTMQDGGLDDE
Ga0209084_100017234	F059768	AGG	MTFQEWVKSFPEAERAKFFRQIMEVVDAGRKAGVPPEELAKMYADTYKQVIEENT
Ga0209084_100017252	F006894	AGGAG	MSGLFFWDYRIVNTKTVNNGEDWYCLQEVVYNEDGKPEGYGAPCTGSEDMESLRDVWHMMSKAMTLPPLQEEDFVNQPQENNDD
Ga0209084_100017253	F014358	AGGAGG	MLGLDWKECIDCGDDVPTSRYQAFCLFCERDREHSATTERMSWCIVQEYTKGNYQFVTATQAPITLKQTNPKENRV
Ga0209084_10001728	F000843	N/A	MPLYQISPRELPEVWPIAAPLIQKAIDLDPTATTIQHVEYSIRTGKMFLLVWEEPDETITGACTVEFWDLPMERMAHVSLMGGKGIVRQHVFEEAKNWMRLHGATRAQCFAQGTLPQMYEKMGMENTHQVMRIKL
Ga0209084_100017284	F008879	AGG	MATTFKKGDVVKAVAVIPQGPVAALRMDEDGNVTYLVEWTDVDGNVQQRWFEESQLTGA
Ga0209084_100017289	F031360	GGAG	MNEIKLSTNLVNAILQYLGSRPYADVFQLVEAIQKEAKEQTPPAPTET

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209084_1000172

Overview

Ecosystem & Geography

Associated Families

Sequences