Scaffold Ga0209084_1000051

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1000051
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113622
• Total Scaffold Genes: 156
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (60.26%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010226	Metagenome / Metatranscriptome	306	Y
F010999	Metagenome / Metatranscriptome	296	Y
F021943	Metagenome	216	Y
F042217	Metagenome	158	Y
F062554	Metagenome / Metatranscriptome	130	N
F067723	Metagenome / Metatranscriptome	125	N
F092044	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_1000051119	F021943	N/A	MLTALDQELFPKLCEVVAMPLHNQWIYLIQKNGSSSLRLQQEQNNLDVFCNEQILSLDFVDVYIRNPKARYVSGVNTYLQHLFRDHPELDVKTALWFAKRYKFLNTHYLPQFHWVANLSQYLKPTTKIRFRDLKELDKITDFRDRALIDPPSQDFVKKLLENDPSAELWWYLDQILLDLDGKLLTWQELINHYKSNYPDIIAHVLPKT
Ga0209084_1000051132	F010226	AGGA	MAIQVIKDTAGNVLWTTDKAQINSESTNVTYQVFATALGTANAVGNLYANAVSVPNGTTQEIYVGAGNYLTLTGNNFTALALGTASSAQEGVIGYGSNP
Ga0209084_1000051133	F010999	N/A	MASLQGVKIMTPYSEIAAELAQRKANEYVPPSIPSVRQQPVEIPGVMYQTRELFQPVVSQPNKDNK
Ga0209084_1000051151	F042217	N/A	MKVVKLNRRFRQYKKHGHVIAVRCDSWLGEGVPLEKICDTKLGARGFMPHNDWHAYFGKANGHGRRPFWITFRRESDLTLVLLSAQLTNNA
Ga0209084_10000513	F092044	AGGAG	MSELMTKLLERLAEMFPDLGYQSKLEAYIASRRPMDVFDVERFQREFSQEFKGFL
Ga0209084_100005169	F067723	N/A	MTQEQKLERWAEREVRRNIHTMIVDDESGGYVAFGRYHLRPSHQSFEVYTTGDNFIGTFSNKRTAISWCVADNHNQLRLAQSIKTLDTKKQTLSADIYCRRQVADRSRNNGFSEVVLTKLQPKVQQHALVDQELEKCLNSAKYIQLRGFQNETARTSGNQAN
Ga0209084_100005184	F062554	N/A	MIRNISGSKYIQVSGGMHTNPYISPGASGAGMVRWSASMNCLEINDGNSWQQLHSSHPMIALSSDAETLLDWARAKRDEEWRIAAKAAEHPTVADALAAMQLAREKLQVVIALCDTTTK