Scaffold Ga0209084_1000001

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1000001
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 524565
• Total Scaffold Genes: 688
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 452 (65.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020009	Metagenome / Metatranscriptome	226	Y
F037225	Metagenome	168	Y
F041597	Metagenome	159	Y
F093853	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100000125	F093853	AGGAG	MPYTNRIKTLEESIRLLDNQIFQLEKEGSSDEKKLIQLKETKEKYTKEVRVMIRAQWDHDHETVDLEDDR
Ga0209084_1000001572	F020009	AGGAG	MIDLENMPAPTQEQIAEARENAFNAEHPASWTWNEEATSYVAPVSVPNDGYPYLWDEATTNWTPFPDYPRE
Ga0209084_1000001573	F041597	GAG	MQFSGMTISGGITVVYIPPPSNKAIFGYGVNNADSMVSITNLVSNTGVVATDTAGVGTGRRNLGGAGYGTDKAIFGYGQTSSLLFSLTNLVSNTGVVATDTAGVGTARSNLAAAGYGGDKAIFGYGANLNQDVMYSLTNLVSNTGVVATDTTGVGTSRFQLAAAGYGTDKAIFGYGYNSSFTPLSITNLISNTGVVGNDVTGVGTARTALAATGYGTDKAIFGYGYAGGVQSITNLVSNTGVVASNTTGVGTARYNLAAAGYGVDTAIFGYGVGPASPPYLSMTNLVSNTGIVATDTTGVGTARYGLAAASYGLS
Ga0209084_100000179	F037225	AGGAG	MNKDMQILFKQAGGYIETDEEGNIFTYAHDFDPEQFARSLVMECYQTLINHGYTDAAHVLETEFAEEWQKYEFPEI