Scaffold Ga0209689_1010958

Overview

Basic Information

• Taxon OID: 3300027748
• Scaffold ID: Ga0209689_1010958
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5989
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013075	Metagenome	274	Y
F026836	Metagenome / Metatranscriptome	196	Y
F037660	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209689_10109582	F037660	GGAG	LAEASGAKKRTGPRATALVAGLIAGVVAGFIAYLVAGPVGFIVAFIMGAITGSRATLLFSRAGEQT
Ga0209689_10109583	F026836	GAG	LMQKTRSVGRLILGIFSIALGIVSLVAFFSITYIAGVGFLGGFYGFILIVLGVGLILPKKEHDTAEIR
Ga0209689_10109588	F013075	GGAG	LSREFLPRAHSRRLGELDASNWKNLEAGRNASRVDPAIREIVSSLNRKGYRTFSSCSGGHRANLRRRFDRHESGYIAFSPPSRIPFTLYLALRGRNHDFMFEAEAVIHDGNGDRRETVYTQLDWQLVDQNTHRREYYEKLFIEMKRIIERFPGQPADQREFLTGLLGKPRLRLGSRIVSGQMKRFTR