NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209689_1000043

Scaffold Ga0209689_1000043


Overview

Basic Information
Taxon OID3300027748 Open in IMG/M
Scaffold IDGa0209689_1000043 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60275
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (75.81%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033744Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0209689_100004319F033744GAGGLAILLLGSVGVARAQLSAPALNSDRGNAAPDFAASSAVKAALPTDLLNPFARPAVTTVLALPLENAEPASPSPRPKFLYGGRDDYRWQLGLSASWLRFRSTPFSANAAGINTSVVYFTNDWFGVEANITAVFAHTIFSNEHVKIGTYGAGPKIAWRKKQWEPWLHGIFGGAQERPQLAGQSRGSYVIKGGGGADYRWNPRLSFRLEGDYVRTGFFKQSQNSFQLAGGIVFHF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.