Scaffold Ga0209189_1140499

Overview

Basic Information

• Taxon OID: 3300027747
• Scaffold ID: Ga0209189_1140499
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1041
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021232	Metagenome	219	N
F048063	Metagenome	148	N
F098551	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_11404991	F021232	N/A	SDTVYCTAESYDLANEIIAADGLVDAVIQQVNHITSIEEGNPVTISYENTSTYDCTSDDVNDKCHKDHY
Ga0209189_11404992	F098551	AGGA	MNNTNTEYNVGDDVSYHINNDSYYAGKIIRMTKKYIFTESGKKFTKIGNNYRMTGSQYCWMSLGRKEKQDPHF
Ga0209189_11404993	F048063	AGGA	MSIILTCNVTGKTVKWSNQSIIDAKIKEYGSLEAFQKAYVSRGAVKKPKVKSMLLRDGEVDLMKSILEEGVKLAPPGLSTKHLTAEQYAAHYQKKVDALVAAGASSAEINWMKQRLDRWRNGA