Scaffold Ga0209189

Basic Information
Taxon OID	3300027747 Open in IMG/M
Scaffold ID	Ga0209189_1005552 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027747 Open in IMG/M

Scaffold ID

Ga0209189_1005552 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7948
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (73.91%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7948

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (73.91%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F026209	Metagenome / Metatranscriptome	198	Y
F036073	Metagenome / Metatranscriptome	170	Y
F046819	Metagenome / Metatranscriptome	150	N
F076813	Metagenome / Metatranscriptome	117	Y
F080837	Metagenome / Metatranscriptome	114	N
F102437	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_100555213	F102437	AGGAG	MVTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPTMDKRKLIVAIDRCMTIKDIQRLFYNALLKFEGMGVI
Ga0209189_100555214	F026209	GAG	MQRWQPKIRVDVNPRSTYNMCMMNKEVTYEIYDQMIGEWRNVTEPAIGGIKWEKRESLGGETQSAYYDHSFYKVPFYGPYDQGRIHRALNRLYPAKFSKFGGYTTVSSVQQLDDEHIKVEMCYHIGD
Ga0209189_100555215	F080837	N/A	MMNKKTNNKKHEFFPKMMTTQVLRPYLKEAKRVGYTVSGSVKDGFIAVVTDACEQHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYAEMAAKD
Ga0209189_100555221	F046819	GGAGG	VNNFKPYTQTNVVDFYKELVKRWADDQLDQLHEYPITDRKNALGRLIDSSLDVFRDDIEEEIRKRNLSFLVD
Ga0209189_10055526	F014710	N/A	MMNTQMEYKTIPAQFKKKGFTYTQLKREGKKAIFQQTRMGSSLNNYEVVKIGRHNGYTMGGVAIAPAETYPGSSLWGITAWTCCSLDAAMQRYDAL
Ga0209189_10055528	F076813	AGGAG	MKHHNFDEQGELRDIFAGLAMQVLIEQVYGSGVTTKWVTNQAYKYADAMLEQRNQVSHNEENNK
Ga0209189_10055529	F036073	GAGG	MSYDADLHCKKIDWMVKNSPDWDYENQTLEQYLDTLPDYPTDAQVAEHNHLYVAPFVPFKKEIPFEGEALNEAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209189_1005552

Overview

Ecosystem & Geography

Associated Families

Sequences