Scaffold Ga0209189

Basic Information
Taxon OID	3300027747 Open in IMG/M
Scaffold ID	Ga0209189_1004806 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027747 Open in IMG/M

Scaffold ID

Ga0209189_1004806 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8678
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (37.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8678

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (37.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011914	Metagenome / Metatranscriptome	285	Y
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F032572	Metagenome / Metatranscriptome	179	N
F035215	Metagenome / Metatranscriptome	172	N
F066486	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_100480610	F032572	GAG	MEIKNTYQYIENYISKPTYFCYVVDRVINTNPYLFSGEYNKKLINKKVWMAKQVYPMCMPEQYTYFKTLKELKTSLNRWGASWVRA
Ga0209189_100480619	F011914	AGGA	MITSYQIKALDENELAYLYYCCKSEWDSKNMGYDFDWYILKAFKNNTIHPILNKYSDNLTDENKPLIMQILNKLEQNK
Ga0209189_100480626	F026210	GGAG	MSPILGANPLDYDAKYPQTADTSVNEDAKMFVMERNTAKEVMFQIEDGTQFYGKISSVPNSEHYCVVVDRNGTPWEWYVREQATRFVENTIK
Ga0209189_100480627	F066486	N/A	MKNKTLSKNDPYYLKIGKFKKKTIYDAKVDMSDQMENTFESLGREHITKEQYINIGFNYALIKGLGEIKNKKNGDKR
Ga0209189_10048063	F035215	N/A	MRRMKMKLRSQIVKEISDRIVEYKTLQVEHDNSQDAVNLLESAIDELENLLEWINE
Ga0209189_10048065	F025679	N/A	MTKTFKIGEYAVGGKIKVSIPKTLTNIKIDVIDSNFGTGQLVNQYIYYSFDRIRIERDLFQIVSGYWSDQILKWIISKWQIEVAENLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209189_1004806

Overview

Ecosystem & Geography

Associated Families

Sequences