Scaffold Ga0209189

Basic Information
Taxon OID	3300027747 Open in IMG/M
Scaffold ID	Ga0209189_1001835 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027747 Open in IMG/M

Scaffold ID

Ga0209189_1001835 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15449
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (90.48%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15449

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (90.48%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F008812	Metagenome / Metatranscriptome	327	Y
F012108	Metagenome / Metatranscriptome	283	Y
F043359	Metagenome / Metatranscriptome	156	Y
F059898	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_100183511	F000325	GGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSSCAFLGDGCYAEQTEKMYPNVRPAGMQNLITERGRIRAMILDAMRQGKSIRWHERGDWFLNGELDLDYVANVTWACESILAEGKTLPDMWFYTHIYDSRLVSFEKYMNVYASIHNDTDMGEALSQGFKLFAWCDSDQKIAPKRPKRKAAAEAWRKSLPKLVVLNGTKFVTCPEIRRGRGVVTCTPTKGSVSCDMCVRGLANVLFPSH
Ga0209189_100183529	F043359	AGG	MEWNNSHKNPPAVGQRVYYFGPNIGIGIGYYSYHPDRKIETYYYNENNEKVVDKEIEICQHVFTNQAKPWTCDACDAPFWLPYDEERAKSWCPIIPEEYTKGLYD
Ga0209189_100183530	F059898	AGG	MTDDREKAMIYILSFFKSRMAAVNKHNVDKTKELISTHQITMNELVDRYVELVYENS
Ga0209189_100183532	F012108	GGAGG	MIKIDLSVREAMYLATNWAYNNDADLYHKIVNSLEAALGVNQNRVVTITSGMNTDNRIPCIKAIRMHTGWGLKEAKDWTDSLVGGWNYDKWVPAPSGTKQSVTLKTPEAAENLLRDLTGLGCEGYLS
Ga0209189_100183539	F008812	AGGA	MIQWIGALVAVIGLLYTGVKDYQHGDISFPKIKQKELTKPKHPIQYCLMAYDPNLNKVFYLHENGQWHDYAPQQRRYETTPQGVQDQGKETVGTVYGTQRESNGYYYGQQAQAYANTQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209189_1001835

Overview

Ecosystem & Geography

Associated Families

Sequences