Scaffold Ga0209189_1000971

Overview

Basic Information

• Taxon OID: 3300027747
• Scaffold ID: Ga0209189_1000971
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22184
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039994	Metagenome	162	N
F057984	Metagenome / Metatranscriptome	135	N
F091592	Metagenome	107	N
F096882	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_100097116	F096882	AGGA	MANNQRSLKESIRAWRTFEDALKSLESFEACAKWVIDNPQICKKLSGIGLMAVMKEDLKKKLD
Ga0209189_100097120	F039994	N/A	MGMVKEIQSARDEVVMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVVRALFAWMQLKKGLPRL
Ga0209189_100097125	F091592	GGA	MISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDAKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGIGNVN
Ga0209189_100097126	F057984	GGA	MRINDSNHSVSGGLSILALGPREKGKINMDGLGKIQILAERKVEMVELDIEVDDETRDTVCHAALREITSDGDALFNYGFNKAIKRFIETKGKKCTKKSSSKKRSRR