Scaffold Ga0209189_1000780

Overview

Basic Information

• Taxon OID: 3300027747
• Scaffold ID: Ga0209189_1000780
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25007
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (85.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070923	Metagenome	122	Y
F072014	Metagenome	121	Y
F078637	Metagenome	116	Y
F082075	Metagenome	113	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_100078016	F070923	GGAGG	VGDAPAGMLPHLKSRLRAEIGPRAVQAGRAFDEFVDAICRCWNSEHWTRLARTQPESQILAVMDAKVLIAKVQEDVEAMWGDSPELRTLYADVGREAVEVFARLWFQSMANRTWMRQACREARRT
Ga0209189_100078017	F102439	GAGG	MLSDEDLPPAKGKRRRMPERLTPPMRKFLTKLARIGARVTWCIELLYDPSKGGQGELTDRAKAGDHTLVLDTVREVEYRAASLAEDIEAFMVPPDKLPSEPGKPARVEAMARRQAAKMHIFDE
Ga0209189_100078021	F082075	N/A	MPHAILRFRLPEEQTEFSAALQGADAKAAIWQVDQYCRGVLKHGEPSEDDRRHLERIRDILRERPGLLDD
Ga0209189_100078041	F072014	AGGCGG	MSFVHLPAPSDVVQALMDRAWDDDVSDDDRILLETAAKTLEVTLDRCIRLASVIERTEVG
Ga0209189_100078046	F078637	N/A	MKQKWITVEFLGGPLDGALRPVQVGVAVYYLASGALIHAYIVDEIHEGLGVRQVMRHFEIINASRFA