Scaffold Ga0209597_1022531

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1022531
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3422
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010821	Metagenome	298	Y
F030055	Metagenome	186	Y
F035727	Metagenome	171	Y
F066703	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10225312	F035727	GGAG	VNEEHRQIANSILSRLKDGEEFSQSVIRTALQDAGDLAPDRGEGLDQEIQQEIDGGWETGCISMVAASLIRISEKAWDESRKRLAEANE
Ga0209597_10225314	F066703	GAGG	MAITKFTHQKDDSFDDTLRLMCSVHGCPNRWSVHSDGEKPKCSKHQWQKTEKKTPAKSWHDVGEEF
Ga0209597_10225317	F010821	AGGAGG	MTDFTFSPTDFNATTILVVANTPDAKQYLAERYGFGCVSVEIRKSAAPEFADSFEFQGLSYA
Ga0209597_10225318	F030055	AGGA	MRHIDTLPFVDARIMIDQGLEHLVIEHGDMAVPFDCYFCPVTGNLWHCYLGTTDISGVMSATAIAELEREFAPKSLYESADYV