Scaffold Ga0209597_1022044

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1022044
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3472
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004669	Metagenome	428	N
F007752	Metagenome	345	Y
F025741	Metagenome	200	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10220441	F004669	GGA	MKLWEIKNFQSSSVKSLFVGQTANGQDCIACAWNSSELYVFAYEGIVDTFLWALETFKSVGQAMAYAKLRNDFEDRRYSLPYHETMEQRTHNQLYMFQLQYLHIFEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA
Ga0209597_10220443	F007752	GGA	MQLWEVKGFESSAVKALFIGKTANGQDCIGCAWDANTLYVYAYEGIVDTFMYYMERFNSVGKAMAFTKLKDGMEEGLYFSPYASGRKLQNHNQLYVLRRYEMKSAMTAHIVVHQNVCFDTPENAIKNLISSGDLEAERSYFVDCMARRVV
Ga0209597_10220444	F025741	N/A	MENTTISQFVSDNVEGDPAFKGYVISELKDLVKQNPTMSLSELLQDATESALEQWDTDQYTDYYQE