Scaffold Ga0209597_1017820

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1017820
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3942
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053077	Metagenome / Metatranscriptome	141	Y
F053753	Metagenome / Metatranscriptome	140	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10178201	F076869	N/A	MITQFMINEITKLISSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0209597_10178203	F053753	N/A	MNHQLKYGYSQLGTNILVKINCKMNKEQAIELEKKFPEICIWQTRNGYRLEGSFNTRQNNLYVYDKFEDFKLSLALNLNDFKINKLIDKNQALLNQGNLELSVADLDLPF
Ga0209597_10178206	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKANYVFNVDYYNKWTNFNEGLLNKIRDYKKYN
Ga0209597_10178207	F053077	N/A	MLYQLPNGKVIHLTVEQYLDLTDLDIQHLIALDAGDHMVNPFSESAVNINTKEKYYDFDYVSLDDDEVQNYKSDDQPFDDIIDLSGLLDN