Scaffold Ga0209597_1013583

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1013583
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4638
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F007113	Metagenome / Metatranscriptome	357	Y
F037728	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_101358312	F037728	N/A	MKRLNITNFTKKVMEIHSDFFMIKYCTDTTNRYIIGIDTNDVVSFKPLLGGKYYKMAIDKVTNEDGNYHIWLWDVGENISYPMSIMPDNISSVSVFTSFLNHTLK
Ga0209597_10135836	F007113	N/A	MKIRLELTPEQLKTVEIALCELFNSDTWTSGRKEADIDKIADRAQYLLHVIESYNKNNKK
Ga0209597_10135839	F003542	N/A	MNTMLKNVKNPVQFDYDLFDSKIGYDSVNKKYLIRVYDYLVFEMDNNPAPKWTGIMVKMLGSNPNNCNPSSYYSSVRRCLKEIGVCYFDTTKRCMVKGRNWDRFVSDEDWSWFVMRTGSCERSTIIK