Scaffold Ga0209597_1011748

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1011748
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5050
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001424	Metagenome / Metatranscriptome	698	Y
F003662	Metagenome / Metatranscriptome	474	Y
F011843	Metagenome	286	Y
F034899	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10117481	F034899	AGG	MICPIVIATVKGHGLAVLLESIRQYAPECPVYLRGPESVIEHFDADYKIYGQPRNFGEDYNEVIEAAMKDWSSCIVANDDI
Ga0209597_101174811	F001424	GGAGG	MGQEATQLSTGYPQNDKLVEDERVFCHQCSKAVEVEQRQSMPAEQMERHRKVNSKPLQWMFDQAKIRNGWATITWSEHQCSQTGLATFPTDVKHRCHLFQAKPSAVESEAWWLT
Ga0209597_10117487	F011843	GGA	MNITLLTKVRHLFNVDYVPRSTNRHNQLQYVKALRILGNKWLIHKDNEVQRIQ
Ga0209597_10117488	F003662	GGAG	MKSKLATVIINGHEWIVVDTEDEKDGKVFCTLMGQDGLAIWHAWVNINDIVGII