Scaffold Ga0209597_1008278

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1008278
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6138
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F010765	Metagenome / Metatranscriptome	299	Y
F019449	Metagenome / Metatranscriptome	229	Y
F028807	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100827810	F019449	N/A	MTIETFTTIVVPGIASLAYFSAGVACFIAHRPALAVMWLCYSIANVCLLSTVLRK
Ga0209597_100827814	F028807	N/A	MITYKISMTGAMLAEPYALLRAVFPQWNGESANANSGYVTVTFDTPQTPVDLGPLVKVELLPNP
Ga0209597_10082785	F000957	N/A	MSSFAHLEGMRNLILEIYAVNERIMTGDICSAKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0209597_10082786	F005588	N/A	MITTIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRLDDILDIQRSLIEEQAAEIRLLKARVADQNDAIIRGTAITPDAYPHE
Ga0209597_10082787	F003714	N/A	MPNAKHPYIETVTFAGRVLTLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNVKRRGPYSSRA
Ga0209597_10082789	F010765	N/A	MPVALRDLGFGILIGSAAWLVRYLCSTEKHSLGYIFRRTATAGLTSLLVGIATKGYFSSEGMAFAAAGCAGYASPELVDLLLAKIKGMKGKTPTKGE