Scaffold Ga0209597_1008098

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1008098
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6223
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F023096	Metagenome / Metatranscriptome	211	N
F025727	Metagenome / Metatranscriptome	200	N
F045750	Metagenome / Metatranscriptome	152	N
F064717	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100809810	F064717	N/A	MKMSLIQELGLTKESMAKMLGPVPAFKAPDPLICRRWEAVPAKIRESILRDNSTFTYRELAKKYGISHSCVWNIKNKQPNKQ
Ga0209597_100809812	F001259	AGGAGG	VRDSPAFIYVHAFNGLIRVESLDTAKHIDGNPEWKHVATINPHVVLESILRATIKERNLIIKHLLS
Ga0209597_10080987	F023096	N/A	MKQSSTHDLVNALNILSAELDTQDGIPNALCAEASTRLLELVQLTSDLTAHIVSNPVHHGRCNAKTKGSYCNCILARLITP
Ga0209597_10080988	F025727	N/A	MSRHAFPLVESIKVVHLSDGRTIRVVRDRTEENLKTNYGDGDIHLTCVSQAHDPIEMIKTLARMESVRSVELVDSKGNGIVVHKQK
Ga0209597_10080989	F045750	GAGG	METVMSRIGRMLGMRMHNSNRPLCPVPQSIQTVSSSPDTVAIDKEPKKKKRKYLKHTYMKTNDSIDKVRAFRVKGLTYKAIGAELNISKQRVFQIIAAGKKRDASNNKWTAGLSSRNANLMEKLGIKDKETAIHAIHNRDIVPFKWPNFGVRSYHDLCSWLGTLPADPGLGRHCPHCGKTSKQ