Scaffold Ga0209597_1005534

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1005534
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7670
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F015597	Metagenome	253	Y
F029754	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10055341	F029754	N/A	TVFTPEAPPAIQSLSGVTVTSTIVDADRNEYDLTVVVAGNFLSFTADYVGSTADWAIGTARWDIKFTQGTTIFYSDTMRLDIIGQVTV
Ga0209597_100553411	F003714	N/A	MPNAQHPYTETLTFAGRVLTLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNVKRRGPYSSRA
Ga0209597_100553412	F005588	N/A	MITTIRPNKMPTFWWLVPWAYARTLHMSANALKAYADRLDDILEIQRSLIEEQAADIRLLKARVRDQDDAIIKGTAITPDAYPHE
Ga0209597_100553413	F000957	N/A	MSNFQHLEGMRNLIMEIYEVNERIMTGDICSAKSAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0209597_100553418	F015597	N/A	MSQPDFNPFDPISAAMGAMHGQNLLAAKDARIKQLEERLEGMREAGDAIWYCVRHAKRVDPAELIEAIEDWQEARNHG