Scaffold Ga0209597_1005051

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1005051
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8043
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018529	Metagenome / Metatranscriptome	234	Y
F023790	Metagenome	208	N
F056374	Metagenome / Metatranscriptome	137	N
F059905	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100505114	F059905	N/A	MKNDCKNAIRYLVSKTYEVYAKYKNSISVLSLPGESWEFENHILNHQDYRNCIQQIPMDLQLICFEKSFRSYSVSNLLDKNKDNNTQYINDKVTVDHLKLLKSKNKFLWFDFCGNPSVESLQFLNSCFVQGEKICAIFTFTLLWRRRDNLPLEIDNLSQSNTNQEAIQIYFKQALKDLNAKSEGYSNKITLLWQYTYISSRAPMICLCVTNDSTLKCEPALKGQGELLKPDQEITPAARTKGDLDLGEELVCKMKTSKRSLAAHKAWVTIRANKSKATLAIAQ
Ga0209597_100505115	F018529	N/A	MNLQEFKQIFSEYGGGFVSPEQINELAEFAPDLPLGVKVGYGSRFATTARHFKLDLENNTKYHLDVHNVEQYVRDVFVPCSTYDEVRNIFGWANKE
Ga0209597_100505116	F023790	N/A	MKILLQSKRFETTTIIEDNKTIYVVITRGELFPDNTQSKAITFDFQRLDKKKLTKKEEKFSDDVFNSIIKDKR
Ga0209597_10050519	F056374	N/A	VLPLSHGLLDWLQMKARKTIEIEVIKERVNRFLAHSRNEDSQARKGHHGLATMLMMEAGAYKGFHYLRKEDVAPGMTFGVEWVDGKPVFHDETRTYFI