NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1002019

Scaffold Ga0209597_1002019


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1002019 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13003
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014971Metagenome258Y
F019829Metagenome227Y
F061848Metagenome131N
F067738Metagenome125N
F072334Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100201910F067738N/AMQALWVALVAGGFTVLVAIINRADKTSRKEHAETYKALGRIEQKIDGHVTNHEKF
Ga0209597_100201913F061848AGGMNFLLAKIFTAVTISMASLAYAYDAYNAPSALPVTPPVTVSLAPRAPSTTTTAAPLTDCQYALQIAQQAGWPLTEMGTVARIIYRESGCKANAFNAKDSNGGSYGYYQINGYWCRPNKYWPIGWLQAQGILQTCNDLFDPMINTNSAIAIWHNSGYGPWALPNP
Ga0209597_100201914F019829N/AMTEYPIPDPGLTERTRQMYTEKYAETFKHFVDEVFRPNFIPAPKPVDHSILLDELAILREKYLNGTPSDEHKFAAAVITAAMAVIIGI
Ga0209597_100201916F072334N/AMTEKVETPDTQLQKVTLLIAMHDYSPDDLNAGDWLLNVLMACAEQKNTAYYGAKEIAKVMQILSVQNCEVVVSNGL
Ga0209597_10020199F014971AGGAMTYEEAVAMYPHDEVHIQIDDVVRPMTPAEYEAFIQRQVNYVPFS
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