Scaffold Ga0209597

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1001955 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027746 Open in IMG/M

Scaffold ID

Ga0209597_1001955 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13199
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (28.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13199

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (28.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F005388	Metagenome / Metatranscriptome	402	N
F057983	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100195515	F002227	AGCAG	MKLTIQSKANAQTIVDLFNAILTGEEQESGAKALSIYDDDKHICSLVAKDGHQILELIIEREPGDKLCPGTPDSETL
Ga0209597_100195517	F001964	GGAGG	MSRNLFGKPLYKVQISGAIGWSDLKERVVKFETVEFASRKDAEKAAKELNPGEYTQGRIRVVPVELSEDYDVYPVAERSKP
Ga0209597_100195520	F057983	N/A	MTDQKIDILFATVEKISKRLGSIEAMMKATTKKINEIENSLERNSDDGAWEGFGPKPEQQPFNPNAETYTLEVSYGPQTIRRDDDDDDETWANRKKLLMNRRVSFLNSSGVVGTPEQEAYLKEIYDRLTAHGR
Ga0209597_10019553	F005388	N/A	MACTNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGSNSGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFITYSSDGPVFPLYIGLEASQRIAQNNPAFRDDQRFADMGTGEGAQLLKRIGANRVIKNFRHVPNLFPPRYSYAGGKYTLVQPFTSTSGTKGTVFSVNPSWTTAAYEAAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLDTDCPDPLDKKGQHYAEFIHAPEPIFTNQGMTIIFRRCTGSLTQIICS
Ga0209597_10019555	F000922	GGA	MPKEVWKRACSLYLAGMDWETIASQLGVNKTTLCKRASLEGVTKVKREMQTVCIQKKTESLESLSAIVRNRLAADAAATLERIDSYDLDGIKDESVRESILGSVAKRSALVFGWSEAGEATSVSINLLGSMPDKLFHVEQSVNPV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209597_1001955

Overview

Ecosystem & Geography

Associated Families

Sequences