NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1001908

Scaffold Ga0209597_1001908


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1001908 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13433
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F051705Metagenome143N
F056414Metagenome137Y
F079788Metagenome115Y
F098688Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_10019081F056414GGAGMKLTEYQRNQLKAAACFGGDQIDKVAASLQRENPGAFWRESELDQRDFYHQPMAAHRSYVERFLPRRKSEYSQEQIQVMAQNHYLTITHQIGVGA
Ga0209597_10019083F027776AGGAMNPLKIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGADSVQRRVEEELTTLRQELKATQVELAYAKAN
Ga0209597_10019084F079788GGAGMDTDDEIESWASIALGLIASVFFFIGLASVIVAACMAWGYYTYEPICGSIAALFTQECK
Ga0209597_10019087F098688AGGAGMSKRDLALDSLTRICEIQQRLINQLIAMEQNSYARGYEDGMAAQAEVDIALNEIAYGESK
Ga0209597_10019088F051705GAGGMQITAIFQDEQEAIKAIHSGYAWQTLQEINEVLRSNRKHGLPFEQAVSQIQASVNDALALIPD

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