Scaffold Ga0209597_1001908

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1001908
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13433
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F051705	Metagenome	143	N
F056414	Metagenome	137	Y
F079788	Metagenome	115	Y
F098688	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10019081	F056414	GGAG	MKLTEYQRNQLKAAACFGGDQIDKVAASLQRENPGAFWRESELDQRDFYHQPMAAHRSYVERFLPRRKSEYSQEQIQVMAQNHYLTITHQIGVGA
Ga0209597_10019083	F027776	AGGA	MNPLKIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGADSVQRRVEEELTTLRQELKATQVELAYAKAN
Ga0209597_10019084	F079788	GGAG	MDTDDEIESWASIALGLIASVFFFIGLASVIVAACMAWGYYTYEPICGSIAALFTQECK
Ga0209597_10019087	F098688	AGGAG	MSKRDLALDSLTRICEIQQRLINQLIAMEQNSYARGYEDGMAAQAEVDIALNEIAYGESK
Ga0209597_10019088	F051705	GAGG	MQITAIFQDEQEAIKAIHSGYAWQTLQEINEVLRSNRKHGLPFEQAVSQIQASVNDALALIPD