Basic Information | |
---|---|
Taxon OID | 3300027746 Open in IMG/M |
Scaffold ID | Ga0209597_1001908 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 13433 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F027776 | Metagenome | 193 | Y |
F051705 | Metagenome | 143 | N |
F056414 | Metagenome | 137 | Y |
F079788 | Metagenome | 115 | Y |
F098688 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209597_10019081 | F056414 | GGAG | MKLTEYQRNQLKAAACFGGDQIDKVAASLQRENPGAFWRESELDQRDFYHQPMAAHRSYVERFLPRRKSEYSQEQIQVMAQNHYLTITHQIGVGA |
Ga0209597_10019083 | F027776 | AGGA | MNPLKIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGADSVQRRVEEELTTLRQELKATQVELAYAKAN |
Ga0209597_10019084 | F079788 | GGAG | MDTDDEIESWASIALGLIASVFFFIGLASVIVAACMAWGYYTYEPICGSIAALFTQECK |
Ga0209597_10019087 | F098688 | AGGAG | MSKRDLALDSLTRICEIQQRLINQLIAMEQNSYARGYEDGMAAQAEVDIALNEIAYGESK |
Ga0209597_10019088 | F051705 | GAGG | MQITAIFQDEQEAIKAIHSGYAWQTLQEINEVLRSNRKHGLPFEQAVSQIQASVNDALALIPD |
⦗Top⦘ |