NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209597_1001799

Scaffold Ga0209597_1001799


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1001799 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13896
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007799Metagenome344N
F028163Metagenome192N
F044361Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100179914F044361N/AMTNWSPIWRVTIEGVVVTNTVLANLSISSGRTNIYTQAQAGYCTVNLINLDQGAIAAKINDAVTIEVKNTAGTYVAIFGGSVVDVTVAVSQVGSVAITQEVTITALGALARLQKALTNGVLTQDYDGNQIYTILEDLLVNNWSEVPAAMTWATYYPATETWANAQNTGLGEIDTPGDYLLANRGSSKTVTWDLVAALATSGLGYIYENAQGQICYADSTHRSQYLAANGYTELSANDALGRGIKIQTKAGDIRNDINLVYSAGNVTATDADSIATYGDLAQQITTSIKNSGDATTQANFYLTLRSTPQPFLESITFALTNPELDDADRDALINVFMGQPVSLANLPANMQSGNFLGFVEGWRFQASYNELSVTLIMSPLPFSIQAMAWQDVSVLEKFNTLSGTLDYAHALVVN
Ga0209597_10017996F028163GGAGGMSRVTEMIDVDTMIGRTLIDGKIVAEFKCEKCDHCERIEILDRAGYLRAVGGEPVLWFCSKCRK
Ga0209597_10017997F007799AGGCGGMSFLDNYEDVAARIQRFWATYPDGKIHTSIMDVNLEKGYVLVECRIYRNYEDQEPAGIDYAFGNVNTYNVQMKKWFIEDTCTSAIGRCAGLVLGTDKRPTVQNMQQVERIDPKIVQDSAVAYDYWSTKFGDVPSFKTREEAEEAGIPTLGVAIDTIKETLGGVQVAAAPLCSHGHMIWREGTAKTGKGWGGYMCPEKVKARQCAPAWYMLGSDGQWRPQV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.