Scaffold Ga0209597

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1001289 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027746 Open in IMG/M

Scaffold ID

Ga0209597_1001289 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16480
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (17.14%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16480

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (17.14%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F018368	Metagenome / Metatranscriptome	235	N
F024743	Metagenome / Metatranscriptome	204	N
F044319	Metagenome / Metatranscriptome	154	N
F046324	Metagenome / Metatranscriptome	151	N
F047570	Metagenome / Metatranscriptome	149	N
F093350	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100128911	F018368	N/A	MTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESIITEEDKIVIRYEVDDEYCKHEITNDMLNNAHVEDGHIVFAWGTQLSISLYKLAVMNAVE
Ga0209597_100128913	F044319	N/A	MKIIDLIASQAGLARFASFTYCSTSTGEVARYTLQLGFSYRNVLHNSITQLKVEQQIMPDFSRQAADEILASLNASLSGTQNKYTKKDIYENYQVDGKNIQGIKVNKNDGSLKIFGLITSKVQITPPVTPYKKYNSAPLTIEKNRITKDLPIGRFREFALDNLVMAKLNGETLVFE
Ga0209597_10012892	F024743	N/A	MNEAQLYNLYSQDGSAYNEGKKAKDLIIIMNVLHLRLEHNMPLHKIAKRCGIKVNKVKLILFNYDSRS
Ga0209597_10012893	F047570	N/A	MTDENKLKIVTLSHNIKALCYILDKKTFSEHCVTSGTFTEIESLFELAKELKEMNKEE
Ga0209597_100128930	F093350	N/A	MLTKDQAFDISEFIYKNGHESLWRVGDNLEKILNGLAVNPDKDQIISKFVAKNGAKTLHTLNIAIFKLVDQLMLSEEAAAVAQHE
Ga0209597_10012894	F004723	AGTAG	MKKGDKFIHTDIVGRKYEVTYTGTRRIVKGCEFEFFVDDKGDSCFFTDTEVKKMEKKD
Ga0209597_10012897	F046324	N/A	MFCSKTKTKAKLEDCAVSWSGDTLSVCNQCRMSIWDFDFDEFHIINDGEPFIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209597_1001289

Overview

Ecosystem & Geography

Associated Families

Sequences