Scaffold Ga0209597_1000422

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1000422
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28052
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.05%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003327	Metagenome / Metatranscriptome	494	Y
F006111	Metagenome / Metatranscriptome	381	N
F008079	Metagenome / Metatranscriptome	339	Y
F012974	Metagenome / Metatranscriptome	275	N
F015420	Metagenome / Metatranscriptome	255	Y
F019928	Metagenome / Metatranscriptome	227	Y
F052290	Metagenome / Metatranscriptome	143	N
F104392	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100042211	F008079	N/A	MKIKDEFIGVKVSHKGNNVNVSTENYTFCESIGLGYMFEEPTVSEPKVVKYKAVKGPIPAPVVDEPAVESDEDGTEAE
Ga0209597_100042215	F104392	N/A	MPSTTIIAQPGQLMPAYNPIKYIINNTNKNEPGFRYIFTIYPAVGSHIPANVVAQYKVLPVYGTGYGEQDISLLMQSLVTYNDSGIGGGVAYNSSQSWYQYDVDLGYEYIYNVDYFQTLQNNGGNVRIVLTGTPNLFVVGDQVIIAQTGTGPTGNPALEGLHTVISATVSTFTVNVLWSTIGESTANGNVAYADQRKTVVLNDALITNKEVFNGAYNNNLNTIAESQPFPSALYLGDSQNDLLMTSNLPYDNLSQSIPVAVATFYNAQFYYNLRVYAGRTYGVFYYDRNENLLDSYSFAPPYDGIWAVFVGPTGLVTEDYAVAINSNGFDANIPYYFTYDNRCTINDQQLIYLDRMGSWQAFSFQLRTYEKGQITREQYNQHIDGQVAGSQWVGVNLQKGSRTYNTNVTKTFDLNTNWMGEYDAKRFQELLTSPQVYYYSPDNINYASDFYFCACVVDATSFEVFSQKNKKLIKQSVTIRLAQQEAING
Ga0209597_100042218	F006111	N/A	MISYQSIVDKITTFYDNHMQVKKVGSDFKEQMGNFATIDEKYPLVYIVPTGVTPYENVTTFNLELYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPTFIPLNNDLLDYAAGWQMNISVVIKSWTNCQIPEQN
Ga0209597_100042219	F052290	N/A	MPYNIKYPMRRKMATVLKRVLKANFLVDTGTLVDSVRINAEISDSFNLRIQIVAAYYFGFLNNGTQTIGAYNLIRQFDAALDADGIYAEIWGGYTEYLTTKYPILEIGNILDRGGDILFSFEPLFGEFYGELDY
Ga0209597_100042228	F019928	N/A	MKHSGVLSIIVFSTGYLTGIALVCEPALYLKLAGASIIGYLSFILALQWEGHE
Ga0209597_100042231	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYTCEQTGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYRTTYVPRTRYQERLAYKLKVKTIYKDRIVEKAQAKATRPRTRGNLNLLFVGVGIGLLLSYLFKFAREKYLF
Ga0209597_100042234	F015420	N/A	MKKLINYFTPVGAEEIAIAKAFIIVTTVTLSILFLFTFLELIL
Ga0209597_100042236	F003327	N/A	MTEFTQLAIKVQDAIANGEYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNEDI
Ga0209597_10004229	F012974	N/A	MFTEAEQVIIEYVFSLPEKEQSYKTHLLKLKAIKDRLLGYEKECFCGSVRRKIWLKDFKQWYETYT