Scaffold Ga0209597_1000331

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1000331
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31822
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (79.59%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010236	Metagenome / Metatranscriptome	306	Y
F015467	Metagenome	254	Y
F018362	Metagenome	235	N
F023588	Metagenome	209	N
F024783	Metagenome	204	Y
F032578	Metagenome	179	N
F035297	Metagenome	172	N
F048305	Metagenome	148	N
F049615	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100033110	F048305	GAG	MGISDYDMTIKNQQFRIAELIYETAQHQLATRKAQIQIAEFGIEIARLNSHIQVLETTLAAMSGELHALRMDTQ
Ga0209597_100033111	F049615	AGGAG	MTPDTVNIITELEQRISELSVALELVTEDRDNLRDAGNSLMHELEACRVTLTQAHSDISRLRVYLAQGAEL
Ga0209597_100033114	F032578	N/A	MIDPIEGRAYDVRSEDILALNYIKTQIQSLDHERRDQYATLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKETYQKAGEALGHLDVKQAELFAQICYGITVDQVTIQYIPEQNTFRVQEESK
Ga0209597_100033118	F035297	AGGAGG	MEPLTDRIKAGWIIAFTMIGWLFFLLPMTGEDIPEGQPTPVSQQAWVTWIIINFVMLILVHLLISKEHRANKRAIKTLKRVAKARLNHPTHK
Ga0209597_100033119	F015467	GGA	MRRITATIVTTVLLTIGIGTAHAVQAPEPTHSPSTTRSEVIPKERQPNIVFQHGDISWLPQLAAEAGWPPRTWKRLGQIILRESGGCPNRRGGDIVNKNCEVIGHDSSNHRSDAGALQINGINYDPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLFRATGSDWSPWIVPEGGW
Ga0209597_100033120	F023588	GAG	MVLVTWADAHSGVATWTPIESLDKDEMIVYTCGFLLPTCDGGKPNHITVYQSRTMDDDIDHVLHIPCAMVRKIAICTPDQLG
Ga0209597_100033123	F024783	N/A	MDWGIVVAALITAVGGVLTTLMLVMRKENTQDHAKVVDALEVLSGNVTTIGTKLDGHIDWHLKGVPNGKVSTGNQSPRTKRRVKD
Ga0209597_100033125	F010236	AGAAG	MKKFQDVAGRIVAVFLSSALAIVGGSAVIAPELEIWKSAVLAGFAATATVIQKLAQSSLDGNLTMDEINDAFGAKKK
Ga0209597_100033133	F018362	AGTAG	MAGLSRGGTFTGSEDLSKDPVMIKGIDNFLRDLAKTYPDFNKEARKAGERVAELLVVAAKFEAASVERNRQAMEVMKGMRAQRDRIPIIKLQENSAFQSKSRKFSSSYSIKTRRRVKRKVTRGDVFFGAEFGGGKYGSSNRTSAGARSRATRVDSQGNRVASDGLRKGGGRTTQFLPHRGQKGYFFWPAVRKNKDNIARVYLDAIDEVLKGLEDKS