Scaffold Ga0209597

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1000227 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027746 Open in IMG/M

Scaffold ID

Ga0209597_1000227 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37613
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (70.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

37613

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (70.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002826	Metagenome / Metatranscriptome	527	Y
F004010	Metagenome / Metatranscriptome	457	Y
F004760	Metagenome / Metatranscriptome	424	N
F007467	Metagenome / Metatranscriptome	350	Y
F007747	Metagenome / Metatranscriptome	345	Y
F010449	Metagenome / Metatranscriptome	303	N
F037193	Metagenome / Metatranscriptome	168	Y
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100022711	F001459	GGGGG	MRRLRAIMAFIRHQEWVDEPKWEAEDERALTGFLGSLTGKKLGLILLNLTLRQNASAVEKNADSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGADEPAVD
Ga0209597_100022715	F004760	AGGAG	MPVYQYTDTRNGSVVELEKSVAERDSVPKYLKRFTVPQRLALVGVGDPLDNPLGSNKTNIMKGYYRQEQKLGSRFKSEFSADQVKRAWSRKGD
Ga0209597_100022719	F010449	AGG	MSEDQVWNIELKLARMEERQVQLYALVERSLANYADIANKVNALEHLRTKILALSGVIGLICSMAWDVIKNRNN
Ga0209597_100022731	F007467	N/A	MTEKEAWEYFEDGLKDAQSFDEAVEWVKKNQKMVKKLTMQAMIRKFDEDISHANKTWLN
Ga0209597_100022736	F041081	GAGG	MIMEDVSVDFEFNGEKYTAYGNAEIDTIKEDIGPVGYREHYFAEVVNNVIMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0209597_100022739	F007747	GGA	VEGSKTKEEKKGQKEMKIGTITFGKSRPAPKMVLVDVDYDKKTGAELFKTGMRLLKKDKEAVIEYVIKKALEYGIKK
Ga0209597_100022747	F004010	AGGA	MPLGKNVSKNMSELAADNRKKGSERGAGGKPRSREQMIAIALSAAGKSKPRKFKAKSGV
Ga0209597_100022748	F002826	GGA	MEVEAKKRLRWARDMLAIARNKLVVERNRASHGHAIDMIQIITMVDAASLVCKEVVGGDDENKG
Ga0209597_100022749	F037193	AGGAGG	MKTKDELAMQVKKEWDEKGWRWKLSLSAGGFTSEIHCYGTAENEYFNCVKNLVDQAYQMQSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209597_1000227

Overview

Ecosystem & Geography

Associated Families

Sequences