Scaffold Ga0209597_1000219

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1000219
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38114
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (84.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010236	Metagenome / Metatranscriptome	306	Y
F022860	Metagenome / Metatranscriptome	212	Y
F050982	Metagenome	144	Y
F066600	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10002192	F066600	N/A	MARTKQLNIDAILKAYEAEAKRAERNAKATRGDPLEQYWLAHACQVRQYKQQAERVQA
Ga0209597_100021931	F010236	AGGA	MKKAQDIAGRIVAVFLSSALAIVGGSAVIAPELEIWKSAVLAGFAACATVIQKLAQSSLDGKLTMEEINSAFGAKAVK
Ga0209597_100021932	F022860	N/A	MKRLTDLIKDNAWTYAGTGLVLITLSGPTLRQAVWLVGVSLVLHAALTLSTKESE
Ga0209597_100021934	F050982	N/A	MSTYFAQVTDGIVTDVRVVSREFMEANPERYTGTWVETFFDTAGKTYAGIGFTWNGTDFVAPVVEPE