Scaffold Ga0209597_1000186

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1000186
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41357
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (81.97%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F004761	Metagenome / Metatranscriptome	424	Y
F026484	Metagenome / Metatranscriptome	197	Y
F032258	Metagenome / Metatranscriptome	180	Y
F048262	Metagenome	148	N
F058086	Metagenome	135	N
F066605	Metagenome	126	N
F080900	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100018613	F026484	GAG	MATTNDAMFEALSASYPSAGQTLGDLLYTFWSEKGLQYRGTLAYQYLKDQGATGETLGDLFNSYFSTTYDITTFDEGTFDEWLELLIFDRYDTVEQTLFSL
Ga0209597_100018618	F080900	N/A	VKKIFSEIHGLTWTLAGTGMVLITLSGSTRVFGIQITLVAIAIHLLGAIFGDTSEK
Ga0209597_100018622	F066605	N/A	MQEFRCLDCLATFVEAELPRRGSICFKCHIKGIKWGFTYGKEDFHGPTVVERQREQMRQAESAGIKAEPVGQRWV
Ga0209597_100018623	F001396	GGTGG	VEPIWVPIVVAILMGPVVVVLQRLRRENTDQHEEGRILLRVIGNKVDKVASKIDGHIGWHDGVKDSVKKED
Ga0209597_100018630	F032258	N/A	MNQSAKLAHTLYGEPTTKHSRLAHAEGARLAAPSGPYIGRNRCTANDDTCEGPKARGTDFCIGHLRNRGEA
Ga0209597_100018631	F004761	GAG	MAITLTTLRSQVRDMADLDETDLSNAVIDQFAREGFQRIYALERRWPILQETYTFNTVANQREYTISTIGDIREIISVVDTSTQGARLTLIDYNDAESIWLGNLDVASRPYFYSFWDKKICLWAKPDIVYPMTVRAFRNPVYTWLTNITETIDLDEFFHAILPYFVLARVYQRQEDSDLSNMYMKSFEEGVAFARRDLMKASSAQPVIMSGGRQYPTMKRWLQTLGRTL
Ga0209597_100018642	F048262	GGA	MAGVGEATIESVQELQPLREAIASCIEQLGEQDRFIIDALNSEMVSLQELGERLGVTKTHAWRLRNSAYERLQSILIKHPIIRERLNLDDKTDNSGF
Ga0209597_100018643	F058086	GGAG	MKESRWDFPAERRYNFSDDMKFGSKGEELTRNFLQSIADGSFEVKTDRYRNGRMVVETQQNPRETGWKDSGLFVTEAKWWVYIYCLDGGMIAVSVDRLKRYIATLPAGRLKKFAWNSNNPTKGFLLLPEEVMDMLINPEYDAEE