Scaffold Ga0209597_1000088

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1000088
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54642
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (40.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F040160	Metagenome	162	N
F061533	Metagenome	131	N
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10000881	F015061	AGGAG	MSEPTPQNETSKAVLEAFTFIKSADETLNERVHAMASLLHTASMMVIRSESRKGEGFECIKYLELAFMYYQNAQFRKRFDEPEKEKDDQPLLFTP
Ga0209597_100008812	F014513	GGA	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRNWTTQEEYVQICCVNDCFTLPARYEQIRLAWIGDESVSLADEWFNATNAFALQAGNSCHRGITEVGGLHVLFRDYTTRAYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVRVTTANPPTLAKSDLLVKGIRGVTKPVTKGRIRVYAYDPYYEAKTLIAIYQPNDAHPTFRRFKAPRTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFMANLALAVQEQEKEMEGTEIPTCAPIRFANYSRADNLIGYDILSPTPNDYFLYR
Ga0209597_100008815	F101028	N/A	MPAEGSVFDGFTSIIAQDADTHPSYLPESFVAESVNRTFRGGINRTRPSIRNISIVAGTGQAETIVNDILGGNFQGAYPYRATNYRTSDGLLLSVSGVIYFLKIVNNQAYAYKIIEGNDPGMMHTFFVQAEDRAYIQNGYQNAIAWDGVLGTLTAFEIQNNDYSEIVSVGTTDFTLIGAPSNTVGVKFTATGSGIGTGTVKLPAYRLNPYLAKMPIGTVMEYAFGRVFVSDRFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMRVMPQIGTNLRGQGELVVLTGNGAFSMDVSIPRSQWNTSNIQRISLLGRGCTSPYLALANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVQNDTPWLKQFASTMFFNNYIISTVAPQTYRAAGVEGLNRYHRGMVVLDLDQSSSPAPDAQLSFRWNGIWTGFRPTQLLTALIQAEKRGFGFSFDKDNKNRLYEFTVAQGDDYGPNGSRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGQVDSYVDFRSDSNPCWSELKVPTTYGCDSCSPQVTECIPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWEYNIVN
Ga0209597_10000883	F061533	N/A	MSNQLEGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVITLSSVRGKHGLTGVSLEHESYDGKNGKVDRDIIKVTATGKIEFDRPSEEPVRRTETKSIVTDNPEKALDEIVEMHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSSKVEAPKKEEPKAEEPNENADINNWASAIVPSGSQKGKKLVDIGKPKLAELYEYYLEKGFTTPFAKCVEKAAEVFHLDSPFTDEPQDDIPY
Ga0209597_100008830	F017989	N/A	MALTQPCFTNLTPDQQNFNIYEQLKQVTGFDIPPYDRIDITYYGATNNIATVLYKNAGVLVATLTLEYATQPPTVNDTNLVKVTITYP
Ga0209597_100008831	F027487	N/A	MACFTALDYRNKSYPFVQTIAAAAGITPISYGCYDSATDAAKLYQFYVGLATIGELTPVTQNCFVQKTEDQQYYLTNEALAAALPPVG
Ga0209597_100008833	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRTITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDAAWFVPEHTLNNEAGYDLCALRVKMAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLAAFNEADPATWARLVRVPRYIKTVLENGCAYIPNRAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKSLYGSCCEVQSYIVPENNQDCYSCAGVGDIVVPS
Ga0209597_100008835	F040160	N/A	MTTEKVKSLCAAISSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGVFKKTKASAKHKEPADSTIDPDLDEI
Ga0209597_100008837	F021128	AGG	MKLKNKNLAPVGGWYWRYEIKRDKLTFPAIVYGSTWSSLMQNIQKDYRSNGVELPNNIEQLVEDQTCQRQPSDRCWYSDGLGDKIAQAIHTVAAATDRVLGTKLEHKARGCSSCNKRRNALNSLS
Ga0209597_100008838	F023326	N/A	MSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGQYGRTYCIRQNINISDFKLLSPSEHFLNAVKLQWPTEVSIYNRGYTNTQLIRTLDELCSNVDICLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLYKCARVQIGKLIDYRHMIVWGGATNDEEKEYDNAIKALAFPSGNEGQKAVDTTRGRKNDRIRLALDELPEMEMGAITSKVNLGANDDVTFIGIGNPSAGDNPHTRWAMPKGCSNFDSVNPDMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEMMLKLCYGDENAIDYVRNAIGWWPKTGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVALCRTSGVQPSKFGMDVSGDGGRVGQAIIREWLRFDSMGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYYYSAYHAFKSRVLFGVSPTSELARELCLRRYTIKNKKIAIETKDDLKGRTGYSPDLSDSLIYALEMARRNGLVFIGNDKPVPTNRFWARDEVSIDTIPDDDYGSDDNGDW
Ga0209597_100008876	F015061	N/A	MSEQTPQNETSKAVMEAFTFIKSADETLNERVHAMASLLHTASMMVIKSESRKGEGFECIKYLELAFMYYQNSQFRKRFDEPEKEKDDQPLLFTP