Scaffold Ga0209597_1000063

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1000063
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63869
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (35.06%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031100	Metagenome / Metatranscriptome	183	Y
F038243	Metagenome	166	Y
F042335	Metagenome	158	N
F068824	Metagenome / Metatranscriptome	124	N
F080908	Metagenome	114	N
F081331	Metagenome	114	N
F084229	Metagenome / Metatranscriptome	112	N
F097332	Metagenome	104	N
F099280	Metagenome / Metatranscriptome	103	N
F100402	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100006322	F031100	N/A	MDDIPSILDTAKFRHLVLDGVSNIANSIQGFQIPEYDELALTYYGSTNNIATVAYSKASVVVATLTLTYSVQPPTANDANLVMVSIA
Ga0209597_100006327	F042335	AGGA	MNDNATNHGLMGTIISTTGFIVSMLPEIEASIRLTGGIISIIAGVLTCIYMVKQISK
Ga0209597_100006338	F099280	GAGG	MAKPTTEAAMPEPAMGMDLPEDMSGIPSPMAEEGSVNISVSKSKFDELHSIAMQLAGAIDALAAEVEGQKAATESLDGQVPAAEGAAMASEEDFLNSIASEGSMR
Ga0209597_100006342	F038243	N/A	MKPKMQYKLVPKGTNEFLELVDFAEEFDHKIIEHPNINVYAHYRDGELYGYSDHVFLPTIYPAFHPKFTRPRDVIQCMNDWITYSQITNSPGYIGVPLKDERINFTNEIMEKLGLTPLKREIYSITT
Ga0209597_100006354	F100402	N/A	MATKRNNHPAFPVPHFGGDAKTGAVKPNSGMGMRDYFAGAALRGYRASEEFSGELPEIVAELSFVDADAMLIEREKQSFNQ
Ga0209597_10000636	F084229	GGA	MNEPNIAQKAVTFVKSAAAFVRAGMPIRNKEQIEERLLICNQCVHYDPTAFSGAGKCGVCGCNMEIKLVMDTERCPLEHWE
Ga0209597_100006361	F081331	AGAAGG	MKELNFDTLTGNGWIQFKDFLAQSDIAFYKTFAGHEECRCNEGKKKQVEVYVYDHRKYSAVAGVGYEVKCTGELPDGTWIELKAHGLKQDHVDPKAQELLSIWDWSVKNNLTKSKI
Ga0209597_10000637	F097332	GGAG	MTRLEAQRKSNEDYMCGRISKEEWDFQFEELGNVRVWSKDGKIHQLKEEHERLRPDNRTT
Ga0209597_100006370	F080908	GGAGG	MSETPYTSEVERLKECDKDYRSIAAQLSVFCSAAIFALREANKDLEDAQVKCEIIPDPFAAQAIDDMFAQYLESLRDYPEIMAIALKFIQQSR
Ga0209597_100006372	F068824	N/A	MNWTTEQLKEKGYTLAPDGHYYYADNYKPPSRRLLDTLVKHAPKRSLDKVRKAKETSKDCTAKCNPKYTLAITRFSTKTLDVDNLAGGCKPLIDQIRYSKLIPDDNPESVEITFSQVKVKTQAEQRTEVRITKA