Scaffold Ga0209597

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1000023 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027746 Open in IMG/M

Scaffold ID

Ga0209597_1000023 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	94399
Total Scaffold Genes	119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	83 (69.75%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

94399

Total Scaffold Genes

119 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

83 (69.75%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F006141	Metagenome / Metatranscriptome	380	Y
F011665	Metagenome / Metatranscriptome	288	Y
F019762	Metagenome / Metatranscriptome	228	Y
F043407	Metagenome / Metatranscriptome	156	Y
F073563	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_1000023103	F011665	AGG	MQNPINLTPITQFVQLLRVAELNQQKELKLTIQQARLLNLALTETLDKLNRDWETLYNALKNTQDTETITVAMDGGGFVEPK
Ga0209597_10000233	F006141	GGAGG	MILEVFLYGFITAFGWWSANHYVIDPYFPPPIEKVESKNKEKQKEN
Ga0209597_100002385	F043407	GGA	MTSTLKTVNKMARTPSQAVVGINKHGLYGAVPPGMTVGGVLPVGQVYTTNTTAGKFLTSGSNGTNWTTGAITTPYDSVMVAKNNPPELEVKGRMVINGRDLEERLNTIEKVLQIPERDVILERKHPKLKKLYDEYITALGKYRTFESIKGDE
Ga0209597_100002386	F019762	AGGAG	MDLHESVAHTRKEMTVKESDGFRVRLVKHEVISPKGLFSLDIIQESLKDGKVADSQTYNFFMNKEELQSLAHGLTA
Ga0209597_100002394	F003080	AGGAG	MTTAQELTDQLINRAKNLKEFVVEREWESIPTGIVRFNIQHTQGHLARIFVPALTQTEAEEMVDEWFEEDVE
Ga0209597_100002395	F073563	GAGG	MNPKYLYTIKWTQPYATYQMRPYLRHLRNEYETQIEARLSRGEFDDAKTVIGRIMAL
Ga0209597_100002397	F002977	GGAGG	MNAQLPAEGIMKTNDWGDSRVYRIACNCHDETHNHNMWVEADDCDIQVTIYTTGKTNWWSKTRWHHIWTLLTKGYIDTESSVHLTKQQALNYAETLKSAITDLEDFRNARQNKEERVTITKMANEQDCV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209597_1000023

Overview

Ecosystem & Geography

Associated Families

Sequences