Scaffold Ga0209597

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1000003 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027746 Open in IMG/M

Scaffold ID

Ga0209597_1000003 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	202880
Total Scaffold Genes	272 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (23.90%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

202880

Total Scaffold Genes

272 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (23.90%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050364	Metagenome / Metatranscriptome	145	Y
F051137	Metagenome	144	Y
F060915	Metagenome / Metatranscriptome	132	Y
F064721	Metagenome / Metatranscriptome	128	N
F087204	Metagenome	110	Y
F103266	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100000311	F060915	AGG	MKTKLNWKRIWLDDNSGYWYSAVVPVIGWEYIVDQNYLSRESEEYIAGTYFSKTDDEITRFSKKFYKTEEAAMIACEKHLQDTAEKFTKWMNKK
Ga0209597_1000003142	F103266	N/A	MMQRPEQEDRIGGLVQIDNYKGSHFELDGWQLSKVLDDILMVQYADINEEGDLVKRGSMWVPINAVNHVWRVGRILLAGPNCKTVTEGDHIVFPNDRGIQVSNLNGLKHIVFLNEARIFGICTPKAS
Ga0209597_100000317	F064721	N/A	MTLKQKIVSIVIVGGLFRISEFIANIIMWLMRLFKTRKPHYLYVYLKYEQDFLYPLAEKICYCLGLKREWDVHQEGLDKLHKLIFGEDK
Ga0209597_100000334	F050364	AGGA	MIPRKYATYQNTKVGDKIRFRESTMHWFTNRIENAKKLVSGQVYTVKKISVASSSTGVILEETNEEVELTWFDIIEDL
Ga0209597_100000394	F051137	N/A	MSKNRVTTCSYFIKRLRDSGYVVDKLFNDYADSDPRSWTAIVDPNVASILVTCYNNHNDLGEEYFEMHDGGQFIPERFKIKTSSIEVIVEYLVKFNINNKSSTYAGA
Ga0209597_100000399	F087204	N/A	MIITSTQQVEDMMNPSNAMDLSEFEDITLKVGSFVCIAKKKKFNFLNFLKFVIEDKKTQNIYFKLLNEENFQIIMKAYLNSTPNIYKKIFRSKLNKEKP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209597_1000003

Overview

Ecosystem & Geography

Associated Families

Sequences