Scaffold Ga0209908_10027009

Overview

Basic Information

• Taxon OID: 3300027745
• Scaffold ID: Ga0209908_10027009
• Source Dataset Name: Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1137
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost → Thawing Permafrost Microbial Communities From The Arctic, Studying Carbon Transformations

Source Dataset Sampling Location

• Location Name: Sweden: Kiruna
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209908_100270091	F013913	GGAGG	MNLTPSTKGSFIAGIGLWCLIWASLFKADEIAQAGGFQRWVSSDRCLRWIRQHKSTSLLGTELFNYGSHGISDPLGVTFALGGTLVNVLMIYLLLPVWDRAKRNRKVLDL
Ga0209908_100270092	F025336	GGAGG	MTLITLVAAAEAMLYSASWSKRNRARRQQVLMGNSLNSARVLPLVDTYLKRKTAGASKVQVFVASNLAEVCRRAVYTRSFEYLLLHVIRTTVLKRRSKLAISSGRIIL
Ga0209908_100270093	F014639	N/A	FTRTPVSRGTGILKRKWRSTLYFFEKHAFESKLEGILRAAAGHEGNSLPPGDRQYQLLSSEADSLCTEFANRWALDIDLLKARIAGLAKLERLSVPTQTMNYARLACLGMVAIPVLCFLMGVLTGLVNVAFHLVGGR