Scaffold Ga0209593_10000719

Overview

Basic Information

• Taxon OID: 3300027743
• Scaffold ID: Ga0209593_10000719
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14725
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007754	Metagenome / Metatranscriptome	345	Y
F070943	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209593_1000071915	F070943	GAG	VGGTITTGAAGTMIITPRYGLVIGGTSLGVSPTQNYVPSITTAPFLYRCLLVVRSIGLPGANSTVICTGKWESGGAVATASSQTSVSHCTTGAAISVDTSVASGLWIGLTVSVAPSIIPQWHVWRSFN
Ga0209593_100007195	F007754	GAGG	MIRLLLAAAVLGLLSAPAYADVVLGGQLWTNTGTTLTLESTVPGGNQPLNIQCVICGDNQPQQSSTFGYTNFKNSGNLSDAIFFSTNVSGGGNPGVDTVGLPYDGSFLRAYLEANGDPNLTFSIGIDVNDTGTPQTLEAFALLNLTQHTVLAQYSLLQPGGALIPSANNGTGFPDYTLSGFDINIGTDIQFGDQLIFYARISGANDGPDSFFLIPQAVPGPVVGAGLPGILAACMSLWGLARYRRRRASPV