NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1021605

Scaffold Ga0209085_1021605


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1021605 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3092
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F006264Metagenome / Metatranscriptome377Y
F012670Metagenome / Metatranscriptome278Y
F040590Metagenome161Y
F099270Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_10216052F006264N/AMIEEPTNLFRQKLPAQAEVCARKALERLQKDLQHEHALSPQDVYYLASAAQILLDIRDLYGKK
Ga0209085_10216053F001059AGGMAYDIEALKADLPTAKELAQFVYDKTQISLDFIGKPKEDQYQVAKNALEGKKVPSDYMTELNPYLDKKELIPEDAIKQLPPRSADLPPEDAKVHFFGATNMPHPTDPQSDRKVQINFRKYENGVITYQITGPLEKTAVGERINKFGQKQPEKYSWLDPRTPEIMMRRADGTYTEKGRGLYAYCIGEKGGGIWPLIDRDLTNFTQKNVTDPWA
Ga0209085_10216054F040590N/AMSGYGTIISGGARMTKGLTKGINDKLEEFAESHKDKAVLANSVRNVFNQNPLSDQHLNNINVKANPKFTTPKLPAKI
Ga0209085_10216055F099270AGGMNTNFQYAQAPNRKGNVDKHPVSKIGGATNVTGPKHGTATPKGSQGAPSCSQSSANKNAGVTAGRKQPVMVSTHADYCGTIKNDGYMDKSVKNYLG
Ga0209085_10216059F012670GAGGMLDEVKTADKRVNAAQKKAMKLATGQIIPEVKPNLGGRPKSIVNRVTEYGALFNKLNEERLAKGLSPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVQNISKDEEVSADEALDDFLTAIRKV

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