Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1021605 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1021605 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3092
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3092

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10216052	F006264	N/A	MIEEPTNLFRQKLPAQAEVCARKALERLQKDLQHEHALSPQDVYYLASAAQILLDIRDLYGKK
Ga0209085_10216053	F001059	AGG	MAYDIEALKADLPTAKELAQFVYDKTQISLDFIGKPKEDQYQVAKNALEGKKVPSDYMTELNPYLDKKELIPEDAIKQLPPRSADLPPEDAKVHFFGATNMPHPTDPQSDRKVQINFRKYENGVITYQITGPLEKTAVGERINKFGQKQPEKYSWLDPRTPEIMMRRADGTYTEKGRGLYAYCIGEKGGGIWPLIDRDLTNFTQKNVTDPWA
Ga0209085_10216054	F040590	N/A	MSGYGTIISGGARMTKGLTKGINDKLEEFAESHKDKAVLANSVRNVFNQNPLSDQHLNNINVKANPKFTTPKLPAKI
Ga0209085_10216055	F099270	AGG	MNTNFQYAQAPNRKGNVDKHPVSKIGGATNVTGPKHGTATPKGSQGAPSCSQSSANKNAGVTAGRKQPVMVSTHADYCGTIKNDGYMDKSVKNYLG
Ga0209085_10216059	F012670	GAGG	MLDEVKTADKRVNAAQKKAMKLATGQIIPEVKPNLGGRPKSIVNRVTEYGALFNKLNEERLAKGLSPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVQNISKDEEVSADEALDDFLTAIRKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1021605

Overview

Ecosystem & Geography

Associated Families

Sequences