Scaffold Ga0209085_1007214

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1007214
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5717
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012867	Metagenome	276	Y
F049634	Metagenome	146	Y
F077308	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100721411	F012867	GGAG	MMKDFMYEQQRESITEEWGDEISQPLLSEKLNVPRVSFRIYYSKDNLTRRIFIFLGNCTPAETETMLGLGFVFASDGDTGNIPDQPVEVCEAVLSSGNY
Ga0209085_100721415	F077308	AGCAG	MIHIKRFIDRVASIESRQGKDVVIPLTDARGLRDELAKLLIDHYDATEGKKNTSEVIEVELVGGKF
Ga0209085_10072146	F049634	GGA	MHKYITNKFNSVFLPYEEGMIEWLTENYPHSKYIVVEV