Scaffold Ga0209085_1005717

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1005717
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6508
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F007848	Metagenome	343	Y
F010521	Metagenome	302	Y
F014955	Metagenome	258	Y
F017107	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100571712	F017107	N/A	MTDYSENYLKIQQLLKKYHNATLKNQYEKATQIACQLAEETIQLEFATYDQVRKQWLG
Ga0209085_100571715	F010521	GAGG	MKLTPAILSHLYSAIYCMKPFCNYKNMPLPEEIDFIVDKGENMGTYLYDPGNDKYEHTITISEIRCGTLDTVLKVLLHECIHMSRHKSSRWTHHDKEFRNKAYRIWSEIGFVDPLEL
Ga0209085_10057172	F006255	GGA	MGELNQLMLEHEEFLEEALDCMEYGGELLTQAQVDCIRQACGKPNRHKKNPVLTEMFNDFGAIFGGNHA
Ga0209085_10057176	F007848	N/A	MGRNRMKDFLGACLLGAVLGAMFAYGIPAKAQTVQMTNAQGYNVGSVQINGNTAQFVNPMGVTTQIATLYPGQVIIQTSQGVTTAVIGNTGYTVPPSPPTPMTPKVMQ
Ga0209085_10057179	F014955	AGG	MGKMDIEKYIVAATGLGYLVVGLAQYFKGSPSNAFIWLGYAAAQVGLWMNLK