NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1005206

Scaffold Ga0209085_1005206


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1005206 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6872
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → unclassified Pseudobdellovibrionaceae → Pseudobdellovibrionaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034165Metagenome / Metatranscriptome175Y
F056554Metagenome / Metatranscriptome137Y
F090310Metagenome108Y
F098561Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_10052063F098561AGGAMAIALGKDCTVSFAGSTIYSARNVTLTESARTIDINPYGSRYAAVYSTGYECSVSVEFNDGADLGSAFSLMHTGGTFQVAGGQGGFSFNAVMTSITETDPIDGVATFVVEGRMTDPRLTR
Ga0209085_10052064F056554AGGAMAIALGKDASTSPPFGTGVISATYTEECETIDVSNRSNIGGSSGAPGKKVAKAGFTTKTWEIECHDATGLITSLEASGSGFTVMSVTENIGIDGAVTFNVTAKEFT
Ga0209085_10052065F034165GAGGMPVSSPSVTITLGKDVTITGVTNARSATVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDVPGVSIGGTFTIAGTQTGNATYVVTNIAQGQPLDGIITYTVSGSRTVSA
Ga0209085_10052067F090310AGGAGMSSTLRRIADSLATGLQSVTWPIASTTVERRNWVNVDVDAMSVPRVFVVPGSADVTRVSRTHMQIDYGITVFVGRHVTTDAEVDGMLDLADSIMLYVRAHSFGAGVTWPAGVTSPQTVSIDINPDDALTERNVWRAVITATYRVFEANVLPTA
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