Scaffold Ga0209085_1004769

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1004769
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7230
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F015330	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100476912	F004695	AGGA	MLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPDGKVNFEFERLSEFDAIASQQAEKMVTYFINSKNDSYQIVRDWAQDSLLHKNGVVMISPIREPITQYKEVEGTRDNLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMMPDETGQPTEPTTDEMQDAIKAHTIYRAKYKLTGFSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYMPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRKDVDNDGEEEIVEVCYSGSYVLYIKEVDFIPMASMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFALQASTPRMGVNPEYIDAEEIQRGVSALFILDRKFDPAKHVFEFAPLQGNLGYIQDAMQRFESDNNRMLGMTSAADTLNPEVMKDGNSGYKLQLAMGPNQIIQDAMVKNCAIGLRDMIYIVWKTMIQYADDYNIQQLADAMSSGQPFLDAKAMENFDFIDRKMINIDLALGFLSDENRITRQQLIMQAQQQFAQAMLQLDPSVPELFAKLRRPFEDTLYALGVKNCDAYLPTLEEATKIAQAKAQQGPSPEQQEIQTKVEMNKAKAGETAMNTQLIKKKIDDIDVDNFYTGMAAKKGKLSAVEMD
Ga0209085_100476913	F003521	GGA	MKSLVKNIREYFNRRTKATDAYKEANLEKRTLVIQNGEVASRLMLNTDFALMFNLYRFGMLERLEEAKTDEERIGNAYYVAGVRDFID
Ga0209085_10047693	F001915	AGGA	MEWSLADPRFDVDDIVEMADSFFGHEADGIVTRSRAVFRHRVTVACTEQLFNKSREFIAVCRDTPLVQLDGDDQPRLLGFCWFDRGGYTTYSNEEISNAKFHHLDLSLPVRNRVRLINEMIDQHILWAHTWGVPIVCSTSIRAEHDGFMRIHAKRGFTVNGSYAWIRTEKGMECLTKK
Ga0209085_10047694	F015330	AGGA	MSDEKVVELKTKNPVGRPKSIVNRVTEYGALFNQLNAAHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV
Ga0209085_10047699	F001059	AGGA	MATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKVPAEFLTEENPYVDKKDLIPVDELKIIPPRSKDLPPEDTQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELIMRRPDGTFTERGRGLHTYLIGEKGGGVWSLIDRDMVSVSAKNIADPWA