Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1004113 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1004113 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7858
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (79.17%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7858

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (79.17%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F008812	Metagenome / Metatranscriptome	327	Y
F012108	Metagenome / Metatranscriptome	283	Y
F057320	Metagenome / Metatranscriptome	136	Y
F086678	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100411313	F008812	AGGA	MIQWVGIVITILGLAYTGIKDYQKGDIKFPPMPQKPALTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYAAQTQPYQAQGQEAVGSTHGPQGASVYRYGQSPQASTNPIR
Ga0209085_100411316	F086678	GAGG	MAKYYIKCGTLELIYSCNKCPRDAAMDAIWETNENDTLDEFIYLDERGYKNYTNADGLTCVLHTSHILKDAGWSIE
Ga0209085_100411317	F057320	AGGA	MSYVGLYDDAGSKNAFYIIKDKKIDRKRVGFKEFESEKEAKFAHRVQSHLAQLDLAPMVYGDVGFIRRHDGEMTFYGYLTEVARPMPTCHDDEYCDGECFQSECKNGQMIQFVVDKLDSMGLSYNDAHKGNFGYIRRNGKWVAVVIDLGVESFTDWDEDIYGKFDYGKYDYDNGCNCVYCKRFRERG
Ga0209085_100411318	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGKLDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKVKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0209085_100411321	F006543	GGAG	MKKFTFAVDIVADELDRDSVVDSISECLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKETTEAIA
Ga0209085_100411322	F012108	AGG	MSVREALNMVSNGCNLDMFEKIVCALEVALGVNQRRCVTITGGMNLDNRIPCIKAIRLHTGWGLKEAKDWTDFLVGGWKYDKWHSAPTGTKQSMMLKTPEAAEALLRDLVGLGCEGFLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1004113

Overview

Ecosystem & Geography

Associated Families

Sequences