Scaffold Ga0209085_1003207

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1003207
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9036
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F020510	Metagenome / Metatranscriptome	223	Y
F043284	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100320710	F005502	GGAGG	VRALLSILAILGITSGQASNVMIDCRPESKRIDVKKMKVRITGYWPGEDEWSSRFQSSTGTRLRAGRHCAVDPDIIPLWSKIKILNGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEAQFNAMQLPKVATVEVSK
Ga0209085_100320712	F020510	GGAGG	VTLPDLLAMFSARVIGTYTPAQYDQQVIIARNNRMRWGMGQW
Ga0209085_100320718	F043284	AGG	MKLKAIVTKLNDTRDKALELVGKTIGLAAEAGTIIQQARTEGEDVRALCEQAGITEEVGRRYEKVAAAQHKLTSGQADAGEMRQTYLRIGMLPDPITASVPADPKPFLWPVIKACQWLGNRGSKYISQDAELREQFIREAEPIVRAYNELKGAE