Scaffold Ga0209085_1002343

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1002343
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10826
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10023435	F098561	AGGAG	MAITLGKDCSIMLDGGYIASARNVTLTESARTIDVNAYGSRYSAAYSTGYECTVSVELNNPAEILAAFSRMHTGTPFTVYGGAAGFSFLAVLTGISETDPIDGVVTCTLEAKMTDPRLLRQS
Ga0209085_10023436	F056554	AGG	MAISLGRDASSAPPFGTGIISATYTETCETIDVSNRANVGGSAGAPGKKVAKAGFVTKTWEIECHDPTSLISNLEAAGSSFSVMSVTENIGIDGAVTFNVTAKEF
Ga0209085_10023437	F034165	AGG	MPVTPSVTITLGKDVNITGVSNARSATVTNSASDVDVTKFGDTSRKFRKALIEQTISLECVDAPGVSIGGTFTISGTQTGNATYIVTNIAQSQPLDGIITYTVDGSRTV
Ga0209085_10023439	F090310	GGAG	MSSVLRTLADRLASGLQSVSWAIPSTVVERKNWANVDVDALSIPHIFVVPGNADVTRISRLIMQVDYTVSVFVGRHVQTDSDVDAMLDLADSVMLQVRAHAFGSSIVWPTGVNGPQTVSIDLNPDDALNERNVWRSVITATYRVFESNMLPTG