Scaffold Ga0209085_1002196

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1002196
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11206
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072014	Metagenome	121	Y
F078637	Metagenome	116	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10021962	F078637	N/A	MSKDWITVEFLGGPLDGALRPVQAGVAIYYLANGAVIHAYAADEIWDGQRMRQVMRHFEIIHFSSWNA
Ga0209085_100219622	F102439	N/A	MGEVQRSLYADDDLPPAKGKRRRMPARLAPEMRKFLTTLARIGARVTWTIELLYNPSIGGQGELCDRAKAGDHTLVLDTVREVEYRASQLGDDIEAFMTPPSKLPAEPGHPSRVDAMARRQAAKQHLFD
Ga0209085_10021968	F072014	GGAGG	MSEEFEYLGAPLDVVQALMDRAWDDDVDDDTRQLLELGAKVLEHTLDRCCKLAHVIEKTEAGL