Scaffold Ga0209085_1002074

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1002074
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11621
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (93.55%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003784	Metagenome	468	Y
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F006653	Metagenome / Metatranscriptome	367	Y
F014590	Metagenome	261	Y
F058947	Metagenome	134	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100207411	F003784	GGA	MYDNDRERVGHNVTDFAAYGLSHFAAGQADATNTHTPTTNPLVDHAAVTGYRGIGVATEDLTSFIESFASLRASRVKGVGHEQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD
Ga0209085_100207412	F004110	AGG	VTELHPVIYDLVPSVANTIHRRYKNHVERDDIKQELMAWAMTRVEDHTIDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMISDGQPKGSSSPAEGGNLLANLIDIKKGYLKLEQDDQAILRMRHHESFTLQQIAGVLECAISTADRRCAQSLRRLQDNLGGVSPWA
Ga0209085_100207416	F014590	GGAGG	VRTRHLQLVSSTHSDTTIAKSNVPSLFGPVRAGLTTSQRTNDQVLTELLNCLESVVESLNYKSFTLYDTLNTAMEEVFAAVCDTQIEEVGTDETP
Ga0209085_100207417	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIITGDSRLTIAVHTRANAVPDVAGRTDYESADESYNGGEA
Ga0209085_100207420	F000821	GGAGG	MNEEYLRAKFNLCLDQAEKNIKEEEIALAIKNLERANSAMARLFGIDEGDNE
Ga0209085_100207422	F058947	GGAG	MISCELQDLEDLMGKAGVLLTGNAYDKAQDYLQDHCVCATYNYLLGYKIGRG
Ga0209085_100207425	F083706	GAGG	MKYLTPRGWLVAGILIGLSIWGLWEISSHLLWTGTGYEWCENLLTCEGEGK
Ga0209085_10020745	F006653	AGGAGG	MSEQLSNKYRDNLRIDAVRDASNALRSELDAIKVDLTNFVGALLQSGVVELVKDEEGNVIYKINKVVLVDESVQQN