Scaffold Ga0209085_1001976

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1001976
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12046
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056554	Metagenome / Metatranscriptome	137	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100197611	F090310	AGGAG	MSSVLRSIADSLAAGLQSVTWAIPSTTVERRNWVNVDVDAMSVPQVFVVPGSADMTRVSRTHMQIDYTVNVFVGRQAHADSDVDLMMDLADSVSLQVRAHYFQGVTWPAGVTSPQAVSIDLNPDDALAERNVWRAVITATYRVFESNVLP
Ga0209085_10019767	F098561	AGGA	MAITLGKDCTISLDGGYIASARNVTLTESARTIEVNPYGSRYAATYSTGYECTVSVELNDVEGLGTAFQRMHTGGTFMVNGGAAGFSFLAVLTGITETDPVDGVATFTLEGKMTDPRLVR
Ga0209085_10019768	F056554	GGA	MAITLGKDAGSAPPFGTGVISATYTEECETIDISNRSNIGGSSGAPGRKVSKAGFITKTWEIECHDPTGLITSLEASGSSFSVMSVTENIGVDGAVTFNVTAKEFT