Scaffold Ga0209085_1001719

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1001719
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13124
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032573	Metagenome	179	Y
F039032	Metagenome / Metatranscriptome	164	N
F057197	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100171912	F057197	AGGA	MANFETWQYDNLVKFAVEANQRLALLNAEIDALNADLKTAINAYRDLLRRDALGFFEAPHPAKTKKTGE
Ga0209085_100171918	F039032	AGGA	MVTLSEVDHKIDAHVDICAIRYEGIEKETRGIHARIKRLEQILVTGCGSIILLLLTILTRGH
Ga0209085_10017198	F032573	AGG	MNKAEAWREWWSKIHKTVPAGSYTPKEAYMYEAWVAAWDAADKQSQAEIIHLKEQLMRANTNDGAYKAAFLAGQMTARGGSWK